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PhyloTrack is a JavaScript–based software implement that integrates the D3.js research facility for information visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining spots and clade color definitions – all in tab delimited format. Functionality inside PhyloTrack shows a informative markers at each unit into the phylogenetic tree, therefore revealing clade-defining polymorphism. This functionality retains been implemented using the tabix tool on the administrator side, providing simple and fast access to which information at each tree node, including clear SNPs stored in VCF-similar files. These insightful editions have been established by comparing allele currents between strain-types using ancestral node comparisons and FST measures due to population differentiation.

Features

• Phylogeny representation of samples
• Genome browser
• Map distribution linked to alleles and spoligotypes
• Sample probe and positioning in its tree

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Be the first to post a examination of PhyloTrack! Additional Project Details Working SystemsLinux Intended AudienceScience/Research Data processing LanguagePython, Perl, PHP, JavaScript Database EnvironmentOther file-based DBMS Related Hierarchies Python Bio-Informatics Software, Perl Bio-Informatics Software, PHP Bio-Informatics Software, JavaScript Bio-Informatics Software Registered 2014-09-22 Similar Business Software

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